Lemon Greek Yogurt Cheesecake Cups – Light, Bright, and Easy

These cheesecake cups bring together tangy lemon, creamy Greek yogurt, and a crunchy graham base for a dessert that feels special without the fuss. They’re portioned, portable, and surprisingly light, with a silky texture that satisfies without being heavy. Think classic cheesecake flavor, but fresher and a bit sunnier.

They’re also easy to make ahead, so they’re ready when you are. Perfect for parties, weeknight treats, or when you want something sweet but not over-the-top.

Lemon Greek Yogurt Cheesecake Cups – Light, Bright, and Easy

Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
Servings 12 servings

Ingredients
  

  • For the crust:
  • 1 cup finely crushed graham crackers (about 8 full sheets)
  • 2 tablespoons granulated sugar
  • 4 tablespoons unsalted butter, melted
  • Pinch of fine sea salt
  • For the filling:
  • 8 ounces cream cheese, softened to room temperature
  • 1 cup plain Greek yogurt (2% or whole milk for best texture)
  • 1/2 cup granulated sugar (or 6 tablespoons for a slightly less sweet version)
  • 2 large eggs, at room temperature
  • 2 teaspoons finely grated lemon zest
  • 3 tablespoons fresh lemon juice
  • 1 teaspoon vanilla extract
  • 2 teaspoons cornstarch (or 1 tablespoon all-purpose flour)
  • Pinch of fine sea salt
  • For serving (optional):
  • Fresh berries (blueberries, raspberries, or sliced strawberries)
  • Thin lemon slices or extra zest
  • A drizzle of honey or berry sauce

Instructions
 

  • Preheat the oven to 325°F (163°C). Line a 12-cup muffin tin with paper liners. For cleaner edges, use parchment-style liners.
  • Make the crust: In a bowl, stir together the graham crumbs, sugar, and salt. Pour in the melted butter and mix until the crumbs are evenly moistened and look like wet sand.
  • Press the crust: Divide the mixture among the liners (about 1 tablespoon per cup). Press firmly with the bottom of a small glass or measuring cup to create a compact layer.
  • Par-bake: Bake the crusts for 5–6 minutes until set and slightly deeper in color. Remove from the oven and set aside to cool slightly.
  • Mix the filling: In a medium bowl, beat the softened cream cheese with a hand mixer until smooth and fluffy, about 1 minute. Add the sugar and beat until creamy and no lumps remain.
  • Add the Greek yogurt, lemon zest, lemon juice, vanilla, cornstarch, and salt. Beat on low until just combined and silky. Scrape the bowl as needed.
  • Beat in the eggs one at a time on low speed. Mix until just incorporated. Do not overmix; a gentle mix keeps the texture soft.
  • Fill the cups: Spoon the batter over the warm crusts, filling each liner nearly to the top. Tap the pan gently on the counter to release any bubbles.
  • Bake for 16–20 minutes, until the centers are mostly set but still slightly jiggly when you nudge the pan. They will finish setting as they cool.
  • Cool in the pan for 20–30 minutes, then transfer to a wire rack. Once at room temperature, cover and chill for at least 3 hours, ideally overnight, for the best texture.
  • Serve: Peel off the liners, top with berries or a little zest, and enjoy. For cleaner edges, serve them well-chilled.
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What Makes This Recipe So Good

Overhead shot of lemon Greek yogurt cheesecake cups just out of the oven and cooling in a muffin tin
  • Fresh lemon flavor: Real lemon juice and zest give these cups a bright, clean taste that cuts through the richness.
  • Lighter than traditional cheesecake: Greek yogurt adds creaminess and protein while keeping the filling lighter.
  • Fast and fuss-free: No water bath, no springform pan. Just mix, spoon, and bake.
  • Perfect portions: Muffin tin cups make serving simple and help with portion control.
  • Make-ahead friendly: Chill well and hold their shape for days, so dessert is always ready.

Ingredients

  • For the crust:
    • 1 cup finely crushed graham crackers (about 8 full sheets)
    • 2 tablespoons granulated sugar
    • 4 tablespoons unsalted butter, melted
    • Pinch of fine sea salt
  • For the filling:
    • 8 ounces cream cheese, softened to room temperature
    • 1 cup plain Greek yogurt (2% or whole milk for best texture)
    • 1/2 cup granulated sugar (or 6 tablespoons for a slightly less sweet version)
    • 2 large eggs, at room temperature
    • 2 teaspoons finely grated lemon zest
    • 3 tablespoons fresh lemon juice
    • 1 teaspoon vanilla extract
    • 2 teaspoons cornstarch (or 1 tablespoon all-purpose flour)
    • Pinch of fine sea salt
  • For serving (optional):
    • Fresh berries (blueberries, raspberries, or sliced strawberries)
    • Thin lemon slices or extra zest
    • A drizzle of honey or berry sauce

Instructions

Close-up, three-quarter angle of a final plated cheesecake cup with the paper liner removed, clean e
  1. Preheat the oven to 325°F (163°C).

    Line a 12-cup muffin tin with paper liners. For cleaner edges, use parchment-style liners.

  2. Make the crust: In a bowl, stir together the graham crumbs, sugar, and salt. Pour in the melted butter and mix until the crumbs are evenly moistened and look like wet sand.
  3. Press the crust: Divide the mixture among the liners (about 1 tablespoon per cup).

    Press firmly with the bottom of a small glass or measuring cup to create a compact layer.

  4. Par-bake: Bake the crusts for 5–6 minutes until set and slightly deeper in color. Remove from the oven and set aside to cool slightly.
  5. Mix the filling: In a medium bowl, beat the softened cream cheese with a hand mixer until smooth and fluffy, about 1 minute. Add the sugar and beat until creamy and no lumps remain.
  6. Add the Greek yogurt, lemon zest, lemon juice, vanilla, cornstarch, and salt.

    Beat on low until just combined and silky. Scrape the bowl as needed.

  7. Beat in the eggs one at a time on low speed. Mix until just incorporated.

    Do not overmix; a gentle mix keeps the texture soft.

  8. Fill the cups: Spoon the batter over the warm crusts, filling each liner nearly to the top. Tap the pan gently on the counter to release any bubbles.
  9. Bake for 16–20 minutes, until the centers are mostly set but still slightly jiggly when you nudge the pan. They will finish setting as they cool.
  10. Cool in the pan for 20–30 minutes, then transfer to a wire rack.

    Once at room temperature, cover and chill for at least 3 hours, ideally overnight, for the best texture.

  11. Serve: Peel off the liners, top with berries or a little zest, and enjoy. For cleaner edges, serve them well-chilled.

How to Store

  • Refrigerate: Store in an airtight container for up to 5 days. Keep them chilled until serving.
  • Freeze: Freeze on a baking sheet until firm, then transfer to a freezer-safe bag or container.

    Freeze for up to 2 months. Thaw in the fridge overnight.

  • Transport tips: If taking to a gathering, keep them in the paper liners and pack in a snug container to prevent smudging.

Benefits of This Recipe

  • Lighter indulgence: Greek yogurt cuts richness while keeping the creamy feel.
  • High success rate: No water bath and a short bake time make it beginner-friendly.
  • Balanced flavor: Bright lemon offsets sweet, creamy filling for a fresh finish.
  • Customizable: Easy to switch up flavors, toppings, and crust options.
  • Great for gatherings: Individual portions look neat on a dessert tray and are easy to serve.

Pitfalls to Watch Out For

  • Overbaking: If the centers are fully firm in the oven, they’ll be dry when cooled. Pull them when the middle still has a slight wobble.
  • Cold ingredients: Cold cream cheese can leave lumps.

    Let cream cheese and eggs come to room temperature before mixing.

  • Overmixing: Beating too long adds air and can cause cracks. Mix just until smooth and combined.
  • Watery yogurt: Very thin yogurt can loosen the batter. Use Greek yogurt and avoid “whipped” or runny varieties.

    If your yogurt is loose, strain it briefly.

  • Skipping chill time: Serving too soon leads to soft, messy cups. Give them time to set fully in the fridge.

Recipe Variations

  • Lemon-Blueberry: Fold 1/2 cup fresh blueberries into the batter and top with a few more before baking.
  • Honey Lemon: Replace 2 tablespoons of sugar with honey and drizzle a little honey on top before serving.
  • Gingersnap Crust: Swap graham crackers for crushed gingersnaps for a spiced, citrusy twist.
  • Gluten-Free: Use gluten-free graham crackers and cornstarch. Check liners and add-ins to ensure they’re gluten-free.
  • Meyer Lemon: Use Meyer lemon zest and juice for a softer, floral lemon flavor.
  • Lemon Raspberry Swirl: Spoon a small dot of raspberry jam on top of each filled cup and swirl with a toothpick.
  • Protein Boost: Use higher-protein Greek yogurt and reduce sugar slightly; top with toasted almonds.

FAQ

Can I make these without cream cheese?

You can, but the texture will change.

For the closest result, replace cream cheese with Neufchâtel cheese. Using only Greek yogurt won’t set the same and can turn out tart and soft.

Do I need to use a water bath?

No. These are baked in a muffin tin, so they cook evenly and gently.

As long as you don’t overbake, they’ll stay smooth and creamy without a water bath.

How do I know when they’re done?

Look for edges that are set and a center that still jiggles slightly when you nudge the pan. If the tops start browning deeply or doming, they’re likely overbaked.

Can I use low-fat or nonfat Greek yogurt?

Yes, but the filling will be a bit less creamy. Whole milk or 2% Greek yogurt gives the best texture and flavor.

What’s the best way to zest the lemon?

Use a microplane to remove only the bright yellow zest, avoiding the white pith, which is bitter.

Zest directly over the bowl to catch the aromatic oils.

Can I make them ahead for a party?

Absolutely. Make them up to 48 hours in advance and keep refrigerated. Add fresh fruit or garnish just before serving for the best look.

Why did my cheesecake cups crack?

Cracks usually come from overmixing, overbaking, or rapid temperature changes.

Mix on low, bake just until jiggly, and cool gradually before chilling.

How can I sweeten these without refined sugar?

Use honey or maple syrup. Start with 1/3 cup and adjust to taste. The texture may be slightly softer, so chill thoroughly.

Wrapping Up

These Lemon Greek Yogurt Cheesecake Cups deliver classic cheesecake comfort with a bright, citrusy twist.

They’re simple to make, easy to customize, and just right for sharing. Keep a batch in the fridge for effortless desserts all week—or dress them up with berries and zest for a crowd-pleasing finish. Light, creamy, and fresh, they might become your new go-to treat.

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