Prep your pan and oven. Line a 12-cup muffin tin or grease it well. Preheat the oven to 350°F (175°C). A properly heated oven helps the muffins rise and set quickly.
Mix the dry ingredients. In a large bowl, whisk together the protein powder, oat flour, cocoa powder, baking powder, baking soda, and salt.
Break up any lumps so the batter stays smooth.
Whisk the wet ingredients. In a separate bowl, whisk the eggs, Greek yogurt, milk, maple syrup, oil, and vanilla until silky and uniform. The yogurt should be fully incorporated with no streaks.
Combine gently. Pour the wet mixture into the dry ingredients. Fold with a spatula just until no dry streaks remain.
The batter will be thick but scoopable. Do not overmix; it can make the muffins tough.
Add mix-ins. If using chocolate chips, seeds, or espresso powder, fold them in now. Reserve a few chocolate chips to sprinkle on top for a bakery look.
Portion the batter. Divide the batter evenly among the muffin cups, filling each about 3/4 full. Top with the reserved chips if you like.
Bake. Place on the center rack and bake for 16–20 minutes.
Start checking at 16 minutes. A toothpick should come out with a few moist crumbs, not wet batter.
Cool correctly. Let the muffins cool in the pan for 5 minutes, then transfer to a wire rack. Cooling helps set the structure so they don’t collapse.
Enjoy. Serve warm or at room temperature.
They’re great plain or with a smear of peanut butter.