Preheat your oven to 350°F (175°C).
Line a 12-cup muffin tin with paper liners or lightly grease with oil spray.
In a medium bowl, whisk the oat flour, almond flour, protein powder, baking powder, baking soda, salt, and cinnamon until no clumps remain.
In a large bowl, whisk the eggs, Greek yogurt, applesauce, maple syrup, oil, and vanilla until smooth.
Add the dry ingredients to the wet. Stir gently with a spatula just until combined. If the batter seems very thick, add 2–3 tablespoons of milk to loosen.
It should be thick but scoopable.
Mix the cinnamon swirl in a small cup: brown sugar and cinnamon.
Fill each muffin cup about one-third full with batter. Sprinkle a pinch of cinnamon swirl over each, then add more batter to fill cups about 3/4 full. Finish with another light sprinkle of swirl on top.
Use a toothpick to gently marble the tops.
Bake for 15–18 minutes, or until a toothpick comes out clean or with a few moist crumbs. Don’t overbake—protein muffins can dry quickly.
Cool in the pan for 5 minutes, then transfer to a wire rack. If using the glaze, whisk the ingredients until smooth and drizzle over fully cooled muffins.
Let the glaze set for 10–15 minutes before storing or serving.